Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MW7_0200Protein involved in cell wall macromolecule catabolic process. (515 aa)    
Predicted Functional Partners:
MW7_0201
Protein involved in two-component sensor activity and two-component signal transduction system (phosphorelay).
 
     0.951
MW7_0199
Protein involved in two-component response regulator activity and two-component signal transduction system (phosphorelay).
 
     0.806
MW7_2977
Protein involved in signal transducer activity and signal transduction.
 
     0.796
MW7_0004
Exoprotein, adhesin or hemolysin.
 
     0.527
MW7_0202
Hypothetical protein.
       0.487
MW7_0003
Protein involved in binding.
 
     0.482
MW7_3031
Hypothetical protein.
  
     0.447
MW7_3177
Hypothetical protein.
  
    0.421
MW7_2965
Protein involved in two-component response regulator activity and two-component signal transduction system (phosphorelay).
  
     0.416
Your Current Organism:
Burkholderiaceae bacterium PBA
NCBI taxonomy Id: 795666
Other names: B. bacterium PBA
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