STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dadAD-amino acid dehydrogenase subunit; Oxidative deamination of D-amino acids. (428 aa)    
Predicted Functional Partners:
MW7_2514
Sarcosine oxidase subunit alpha; Protein involved in aminomethyltransferase activity and glycine catabolic process; Belongs to the GcvT family.
  
 0.977
MW7_3281
Glutamate synthase, large subunit; Protein involved in glutamate synthase (NADPH) activity and electron transport.
  
 
 0.745
MW7_2515
Protein involved in sarcosine oxidase activity and glycine metabolic process.
  
 0.713
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.688
MW7_2513
Sarcosine oxidase subunit gamma.
  
 0.644
MW7_2169
Oxidoreductase, FAD-binding, putative; Protein involved in FMN binding and oxidation reduction.
  
  
  0.626
MW7_2194
Putative D-amino-acid dehydrogenase (dadA); Protein involved in oxidoreductase activity and oxidation reduction.
  
  
 
0.615
MW7_0766
Sulfite reductase; Protein involved in iron ion binding and oxidation reduction.
  
  
  0.607
MW7_0524
Leucine-binding transcriptional regulator; Protein involved in transcription factor activity and regulation of transcription, DNA-dependent.
 
     0.602
MW7_2649
Isocitrate dehydrogenase (NADP(+)); Protein involved in magnesium ion binding and glyoxylate cycle.
   
 
  0.594
Your Current Organism:
Burkholderiaceae bacterium PBA
NCBI taxonomy Id: 795666
Other names: B. bacterium PBA
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