Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MW7_1007Putative RNA polymerase sigma factor. (134 aa)    
Predicted Functional Partners:
MW7_1010
Putative Bacteriophage-related DNA primase; Protein involved in nucleic acid binding and DNA metabolic process.
 
     0.954
MW7_1009
Protein involved in nucleic acid binding.
 
     0.950
MW7_1011
Hypothetical protein.
 
     0.947
MW7_1014
Hypothetical protein.
 
     0.943
MW7_1015
Hypothetical protein.
 
     0.942
MW7_1017
Hypothetical protein.
 
     0.942
MW7_1013
Putative ATP-dependent Helicase; Protein involved in DNA binding and auxin biosynthetic process.
 
     0.929
MW7_1018
Protein involved in nucleotide binding.
 
     0.925
MW7_1075
Protein involved in nucleic acid binding.
 
     0.790
MW7_1084
Hypothetical protein.
 
     0.781
Your Current Organism:
Burkholderiaceae bacterium PBA
NCBI taxonomy Id: 795666
Other names: B. bacterium PBA
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