MW7_1007 protein (Burkholderiaceae bacterium PBA)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MW7_1007

Putative RNA polymerase sigma factor. (134 aa)

Predicted Functional Partners:

MW7_1010

0.955

MW7_1009

0.950

MW7_1011

0.948

MW7_1014

0.943

MW7_1015

0.943

MW7_1017

0.943

MW7_1013

0.930

MW7_1018

0.925

MW7_1075

0.790

MW7_1084

0.782

Your Current Organism:

Burkholderiaceae bacterium PBA

NCBI taxonomy Id: 795666
Other names: B. bacterium PBA

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MW7_1007	MW7_1009	Putative RNA polymerase sigma factor.	Protein involved in nucleic acid binding.	0.950
MW7_1007	MW7_1010	Putative RNA polymerase sigma factor.	Putative Bacteriophage-related DNA primase; Protein involved in nucleic acid binding and DNA metabolic process.	0.955
MW7_1007	MW7_1011	Putative RNA polymerase sigma factor.	Hypothetical protein.	0.948
MW7_1007	MW7_1013	Putative RNA polymerase sigma factor.	Putative ATP-dependent Helicase; Protein involved in DNA binding and auxin biosynthetic process.	0.930
MW7_1007	MW7_1014	Putative RNA polymerase sigma factor.	Hypothetical protein.	0.943
MW7_1007	MW7_1015	Putative RNA polymerase sigma factor.	Hypothetical protein.	0.943
MW7_1007	MW7_1017	Putative RNA polymerase sigma factor.	Hypothetical protein.	0.943
MW7_1007	MW7_1018	Putative RNA polymerase sigma factor.	Protein involved in nucleotide binding.	0.925
MW7_1007	MW7_1075	Putative RNA polymerase sigma factor.	Protein involved in nucleic acid binding.	0.790
MW7_1007	MW7_1084	Putative RNA polymerase sigma factor.	Hypothetical protein.	0.782
MW7_1009	MW7_1007	Protein involved in nucleic acid binding.	Putative RNA polymerase sigma factor.	0.950
MW7_1009	MW7_1010	Protein involved in nucleic acid binding.	Putative Bacteriophage-related DNA primase; Protein involved in nucleic acid binding and DNA metabolic process.	0.958
MW7_1009	MW7_1011	Protein involved in nucleic acid binding.	Hypothetical protein.	0.950
MW7_1009	MW7_1013	Protein involved in nucleic acid binding.	Putative ATP-dependent Helicase; Protein involved in DNA binding and auxin biosynthetic process.	0.947
MW7_1009	MW7_1014	Protein involved in nucleic acid binding.	Hypothetical protein.	0.945
MW7_1009	MW7_1015	Protein involved in nucleic acid binding.	Hypothetical protein.	0.945
MW7_1009	MW7_1017	Protein involved in nucleic acid binding.	Hypothetical protein.	0.942
MW7_1009	MW7_1018	Protein involved in nucleic acid binding.	Protein involved in nucleotide binding.	0.928
MW7_1009	MW7_1075	Protein involved in nucleic acid binding.	Protein involved in nucleic acid binding.	0.543
MW7_1009	MW7_1084	Protein involved in nucleic acid binding.	Hypothetical protein.	0.757