MW7_1284 protein (Burkholderiaceae bacterium PBA)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MW7_1284

MaoC domain-containing protein dehydratase; Protein involved in oxidoreductase activity and metabolic process. (159 aa)

Predicted Functional Partners:

MW7_3448

0.959

MW7_1362

0.915

MW7_1975

0.794

MW7_1540

0.792

MW7_0466

0.789

MW7_2990

0.789

MW7_1783

0.788

MW7_1938

0.781

MW7_2393

0.780

MW7_2293

0.748

Your Current Organism:

Burkholderiaceae bacterium PBA

NCBI taxonomy Id: 795666
Other names: B. bacterium PBA

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MW7_0466	MW7_1284	NAD-binding 3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	MaoC domain-containing protein dehydratase; Protein involved in oxidoreductase activity and metabolic process.	0.789
MW7_0466	MW7_1362	NAD-binding 3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	Quinone oxidoreductase; Protein involved in nucleotide binding and oxidation reduction.	0.612
MW7_0466	MW7_1540	NAD-binding 3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	AMP-dependent synthetase and ligase; Protein involved in catalytic activity and metabolic process.	0.942
MW7_0466	MW7_1783	NAD-binding 3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	0.660
MW7_0466	MW7_1938	NAD-binding 3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide.	0.495
MW7_0466	MW7_1975	NAD-binding 3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	3-hydroxybutyryl-CoA epimerase; Protein involved in nucleotide binding and isoleucine catabolic process.	0.654
MW7_0466	MW7_2293	NAD-binding 3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	3-hydroxyacyl-coa dehydrogenase oxidoreductase; Protein involved in nucleotide binding and isoleucine catabolic process.	0.707
MW7_0466	MW7_2393	NAD-binding 3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	Catalase; Protein involved in catalase activity and tryptophan metabolic process; Belongs to the catalase family.	0.441
MW7_0466	MW7_2990	NAD-binding 3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	Multifunctional 3-hydroxybutyryl-CoA epimerase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	0.656
MW7_0466	MW7_3448	NAD-binding 3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	Nadph:quinone oxidoreductase; Protein involved in nucleotide binding and electron transport.	0.675
MW7_1284	MW7_0466	MaoC domain-containing protein dehydratase; Protein involved in oxidoreductase activity and metabolic process.	NAD-binding 3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	0.789
MW7_1284	MW7_1362	MaoC domain-containing protein dehydratase; Protein involved in oxidoreductase activity and metabolic process.	Quinone oxidoreductase; Protein involved in nucleotide binding and oxidation reduction.	0.915
MW7_1284	MW7_1540	MaoC domain-containing protein dehydratase; Protein involved in oxidoreductase activity and metabolic process.	AMP-dependent synthetase and ligase; Protein involved in catalytic activity and metabolic process.	0.792
MW7_1284	MW7_1783	MaoC domain-containing protein dehydratase; Protein involved in oxidoreductase activity and metabolic process.	3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	0.788
MW7_1284	MW7_1938	MaoC domain-containing protein dehydratase; Protein involved in oxidoreductase activity and metabolic process.	Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide.	0.781
MW7_1284	MW7_1975	MaoC domain-containing protein dehydratase; Protein involved in oxidoreductase activity and metabolic process.	3-hydroxybutyryl-CoA epimerase; Protein involved in nucleotide binding and isoleucine catabolic process.	0.794
MW7_1284	MW7_2293	MaoC domain-containing protein dehydratase; Protein involved in oxidoreductase activity and metabolic process.	3-hydroxyacyl-coa dehydrogenase oxidoreductase; Protein involved in nucleotide binding and isoleucine catabolic process.	0.748
MW7_1284	MW7_2393	MaoC domain-containing protein dehydratase; Protein involved in oxidoreductase activity and metabolic process.	Catalase; Protein involved in catalase activity and tryptophan metabolic process; Belongs to the catalase family.	0.780
MW7_1284	MW7_2990	MaoC domain-containing protein dehydratase; Protein involved in oxidoreductase activity and metabolic process.	Multifunctional 3-hydroxybutyryl-CoA epimerase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	0.789
MW7_1284	MW7_3448	MaoC domain-containing protein dehydratase; Protein involved in oxidoreductase activity and metabolic process.	Nadph:quinone oxidoreductase; Protein involved in nucleotide binding and electron transport.	0.959