STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
leuELeucine export protein LeuE; Protein involved in amino acid transport. (223 aa)    
Predicted Functional Partners:
carB
Protein involved in carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity and pyrimidine base metabolic process; Belongs to the CarB family.
  
  
 0.778
carA
Protein involved in carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity and pyrimidine base metabolic process; Belongs to the CarA family.
  
    0.691
greA
GreA protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.441
MW7_1705
Hypothetical protein.
       0.419
MW7_1699
Soluble lytic murein transglycosylase; Protein involved in hydrolase activity, acting on glycosyl bonds and cell wall macromolecule catabolic process.
   
   0.416
Your Current Organism:
Burkholderiaceae bacterium PBA
NCBI taxonomy Id: 795666
Other names: B. bacterium PBA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.