Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
alkBAlkylated DNA repair protein AlkB. (217 aa)    
Predicted Functional Partners:
ada
Transcriptional regulator, AraC family; Protein involved in transcription factor activity and DNA repair.
  
 0.973
MW7_2951
Helicase domain-containing protein; Protein involved in DNA binding and auxin biosynthetic process.
    
  0.551
MW7_2189
Cysteine dioxygenase; Protein involved in iron ion binding and coumarin biosynthetic process.
       0.486
MW7_2186
Lipocalin family protein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.
       0.427
MW7_0383
3-methyladenine dna glycosylase 8-oxoguanine dna glycosylase; Protein involved in DNA binding and base-excision repair.
     
 0.401
Your Current Organism:
Burkholderiaceae bacterium PBA
NCBI taxonomy Id: 795666
Other names: B. bacterium PBA
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