MW7_2292 protein (Burkholderiaceae bacterium PBA)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MW7_2292

Protein involved in acyl-CoA dehydrogenase activity and electron transport. (595 aa)

Predicted Functional Partners:

MW7_2293

0.933

MW7_0466

0.861

MW7_1783

0.861

MW7_1975

0.861

MW7_2990

0.861

MW7_2294

0.850

MW7_1118

0.800

MW7_0219

0.758

MW7_2922

0.734

MW7_0467

0.721

Your Current Organism:

Burkholderiaceae bacterium PBA

NCBI taxonomy Id: 795666
Other names: B. bacterium PBA

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MW7_0219	MW7_0466	Protein involved in acetyl-CoA C-acetyltransferase activity and pyruvate metabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	NAD-binding 3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	0.987
MW7_0219	MW7_0467	Protein involved in acetyl-CoA C-acetyltransferase activity and pyruvate metabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	Protein involved in acetyl-CoA C-acyltransferase activity and isoleucine catabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	0.686
MW7_0219	MW7_1783	Protein involved in acetyl-CoA C-acetyltransferase activity and pyruvate metabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	0.977
MW7_0219	MW7_1975	Protein involved in acetyl-CoA C-acetyltransferase activity and pyruvate metabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxybutyryl-CoA epimerase; Protein involved in nucleotide binding and isoleucine catabolic process.	0.977
MW7_0219	MW7_2292	Protein involved in acetyl-CoA C-acetyltransferase activity and pyruvate metabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	Protein involved in acyl-CoA dehydrogenase activity and electron transport.	0.758
MW7_0219	MW7_2293	Protein involved in acetyl-CoA C-acetyltransferase activity and pyruvate metabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxyacyl-coa dehydrogenase oxidoreductase; Protein involved in nucleotide binding and isoleucine catabolic process.	0.987
MW7_0219	MW7_2294	Protein involved in acetyl-CoA C-acetyltransferase activity and pyruvate metabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	Protein involved in acetyl-CoA C-acyltransferase activity and isoleucine catabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	0.834
MW7_0219	MW7_2922	Protein involved in acetyl-CoA C-acetyltransferase activity and pyruvate metabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	Protein involved in enoyl-CoA hydratase activity and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	0.710
MW7_0219	MW7_2990	Protein involved in acetyl-CoA C-acetyltransferase activity and pyruvate metabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	Multifunctional 3-hydroxybutyryl-CoA epimerase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	0.977
MW7_0466	MW7_0219	NAD-binding 3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	Protein involved in acetyl-CoA C-acetyltransferase activity and pyruvate metabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	0.987
MW7_0466	MW7_0467	NAD-binding 3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	Protein involved in acetyl-CoA C-acyltransferase activity and isoleucine catabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	0.996
MW7_0466	MW7_1118	NAD-binding 3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	Electron transfer flavoprotein alpha-subunit; Protein involved in electron carrier activity and electron transport.	0.792
MW7_0466	MW7_1783	NAD-binding 3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	0.763
MW7_0466	MW7_1975	NAD-binding 3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	3-hydroxybutyryl-CoA epimerase; Protein involved in nucleotide binding and isoleucine catabolic process.	0.763
MW7_0466	MW7_2292	NAD-binding 3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	Protein involved in acyl-CoA dehydrogenase activity and electron transport.	0.861
MW7_0466	MW7_2293	NAD-binding 3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	3-hydroxyacyl-coa dehydrogenase oxidoreductase; Protein involved in nucleotide binding and isoleucine catabolic process.	0.856
MW7_0466	MW7_2294	NAD-binding 3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	Protein involved in acetyl-CoA C-acyltransferase activity and isoleucine catabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	0.987
MW7_0466	MW7_2922	NAD-binding 3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	Protein involved in enoyl-CoA hydratase activity and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	0.660
MW7_0466	MW7_2990	NAD-binding 3-hydroxyacyl-CoA dehydrogenase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	Multifunctional 3-hydroxybutyryl-CoA epimerase; Protein involved in nucleotide binding and isoleucine catabolic process; Belongs to the enoyl-CoA hydratase/isomerase family.	0.763
MW7_0467	MW7_0219	Protein involved in acetyl-CoA C-acyltransferase activity and isoleucine catabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	Protein involved in acetyl-CoA C-acetyltransferase activity and pyruvate metabolic process; Belongs to the thiolase-like superfamily. Thiolase family.	0.686