Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MW7_2575Helix-turn-helix domain protein; Protein involved in sequence-specific DNA binding. (96 aa)    
Predicted Functional Partners:
MW7_2879
HipA domain-containing protein.
   
 0.907
MW7_2963
HipA domain-containing protein.
   
 0.907
MW7_2961
XRE family transcriptional regulator; Protein involved in sequence-specific DNA binding.
 
   
 0.745
MW7_1475
Hypothetical protein.
     
 0.697
MW7_1476
Transcriptional regulator, XRE family; Protein involved in sequence-specific DNA binding.
     
 0.697
MW7_0644
Putative regulator PrlF.
     
  0.688
MW7_0645
Hypothetical protein.
     
  0.688
MW7_2576
Lipoprotein.
 
     0.579
MW7_2257
XRE family transcriptional regulator; Protein involved in sequence-specific DNA binding.
  
     0.543
MW7_2581
Protein involved in regulation of transcription.
 
     0.430
Your Current Organism:
Burkholderiaceae bacterium PBA
NCBI taxonomy Id: 795666
Other names: B. bacterium PBA
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