STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANE21852.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)    
Predicted Functional Partners:
ANE22768.1
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.542
rsgA
Ribosome small subunit-dependent GTPase; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
       0.513
ANE21849.1
Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.511
ANE21850.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.511
ANE22769.1
acetyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.482
ANE22960.1
acetyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.475
ANE22961.1
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.447
Your Current Organism:
Denitrobacterium detoxificans
NCBI taxonomy Id: 79604
Other names: ATCC 700546, CCUG 56741, D. detoxificans, DSM 21843, Denitrobacterium detoxificans Anderson et al. 2000, nitropropanol-degrading bacterium NPOH1, strain NPOH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.