Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AIE58893.1 | AIE59084.1 | BMMGA3_02115 | BMMGA3_03120 | Hypothetical protein. | DNA topoisomerase III. | 0.424 |
AIE58893.1 | birA | BMMGA3_02115 | BMMGA3_10625 | Hypothetical protein. | Bifunctional protein BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | 0.523 |
AIE58893.1 | dnaA | BMMGA3_02115 | BMMGA3_00005 | Hypothetical protein. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.480 |
AIE58893.1 | ffh | BMMGA3_02115 | BMMGA3_05995 | Hypothetical protein. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.474 |
AIE58893.1 | noc | BMMGA3_02115 | BMMGA3_16725 | Hypothetical protein. | Nucleoid occlusion protein; Effects nucleoid occlusion by binding relatively nonspecifically to DNA and preventing the assembly of the division machinery in the vicinity of the nucleoid, especially under conditions that disturb the cell cycle. It helps to coordinate cell division and chromosome segregation by preventing the formation of the Z ring through the nucleoid, which would cause chromosome breakage. Belongs to the ParB family. | 0.913 |
AIE58893.1 | ribBA | BMMGA3_02115 | BMMGA3_09895 | Hypothetical protein. | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.414 |
AIE58893.1 | sftA | BMMGA3_02115 | BMMGA3_13360 | Hypothetical protein. | DNA translocase SftA; Belongs to the FtsK/SpoIIIE/SftA family. | 0.512 |
AIE58893.1 | spo0J | BMMGA3_02115 | BMMGA3_16715 | Hypothetical protein. | Stage 0 sporulation protein J; Belongs to the ParB family. | 0.946 |
AIE58893.1 | spoIIIE | BMMGA3_02115 | BMMGA3_06415 | Hypothetical protein. | DNA translocase SpoIIIE; Belongs to the FtsK/SpoIIIE/SftA family. | 0.489 |
AIE58893.1 | topA | BMMGA3_02115 | BMMGA3_06070 | Hypothetical protein. | DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.424 |
AIE59084.1 | AIE58893.1 | BMMGA3_03120 | BMMGA3_02115 | DNA topoisomerase III. | Hypothetical protein. | 0.424 |
AIE59084.1 | dnaA | BMMGA3_03120 | BMMGA3_00005 | DNA topoisomerase III. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.421 |
AIE59084.1 | ffh | BMMGA3_03120 | BMMGA3_05995 | DNA topoisomerase III. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.556 |
AIE59084.1 | ribBA | BMMGA3_03120 | BMMGA3_09895 | DNA topoisomerase III. | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.451 |
AIE59084.1 | sftA | BMMGA3_03120 | BMMGA3_13360 | DNA topoisomerase III. | DNA translocase SftA; Belongs to the FtsK/SpoIIIE/SftA family. | 0.447 |
AIE59084.1 | spoIIIE | BMMGA3_03120 | BMMGA3_06415 | DNA topoisomerase III. | DNA translocase SpoIIIE; Belongs to the FtsK/SpoIIIE/SftA family. | 0.447 |
AIE59084.1 | topA | BMMGA3_03120 | BMMGA3_06070 | DNA topoisomerase III. | DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.466 |
birA | AIE58893.1 | BMMGA3_10625 | BMMGA3_02115 | Bifunctional protein BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | Hypothetical protein. | 0.523 |
birA | dnaA | BMMGA3_10625 | BMMGA3_00005 | Bifunctional protein BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.466 |
birA | ribBA | BMMGA3_10625 | BMMGA3_09895 | Bifunctional protein BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.587 |
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