Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIE59320.1N-6 adenine-specific DNA methylase YitW. (102 aa)    
Predicted Functional Partners:
yitV
Putative esterase YitV.
       0.797
yurY
Vegetative protein.
 
  
 0.763
sufD
FeS cluster assembly protein SufD.
 
   
 0.696
yitU
Putative phosphatase YitU.
  
    0.676
csd
Putative cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
  
 0.644
sufB
FeS cluster assembly protein SufB.
 
   
 0.635
nifU
NifU-like protein.
  
  
 0.620
AIE58900.1
Nitrogen fixation protein.
  
  
 0.607
AIE59316.1
Hypothetical protein.
       0.580
AIE59317.1
Hypothetical protein.
       0.580
Your Current Organism:
Bacillus methanolicus MGA3
NCBI taxonomy Id: 796606
Other names: B. methanolicus MGA3, Bacillus methanolicus str. MGA3, Bacillus methanolicus strain MGA3
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