Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AIE59486.1 | helD | BMMGA3_05280 | BMMGA3_07645 | Hypothetical protein; Belongs to the UPF0356 family. | Helicase IV. | 0.511 |
AIE59486.1 | rpoC | BMMGA3_05280 | BMMGA3_00660 | Hypothetical protein; Belongs to the UPF0356 family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.691 |
AIE59486.1 | rpoE | BMMGA3_05280 | BMMGA3_16145 | Hypothetical protein; Belongs to the UPF0356 family. | DNA-directed RNA polymerase subunit delta; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family. | 0.696 |
AIE59486.1 | rpoZ | BMMGA3_05280 | BMMGA3_05855 | Hypothetical protein; Belongs to the UPF0356 family. | Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.618 |
AIE59486.1 | sigA | BMMGA3_05280 | BMMGA3_11890 | Hypothetical protein; Belongs to the UPF0356 family. | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.511 |
AIE59486.1 | spxA | BMMGA3_05280 | BMMGA3_04545 | Hypothetical protein; Belongs to the UPF0356 family. | Regulatory protein spx; Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development- promoting processes and to increase transcription of genes involved in thiol homeostasis, during periods of extreme stress. Belongs to the ArsC family. Spx subfamily. | 0.624 |
AIE60840.1 | dnaI | BMMGA3_12235 | BMMGA3_12985 | Hypothetical protein; Belongs to the UPF0473 family. | Primosomal protein DnaI. | 0.572 |
AIE60840.1 | rpoE | BMMGA3_12235 | BMMGA3_16145 | Hypothetical protein; Belongs to the UPF0473 family. | DNA-directed RNA polymerase subunit delta; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family. | 0.719 |
AIE60840.1 | yqeH | BMMGA3_12235 | BMMGA3_12135 | Hypothetical protein; Belongs to the UPF0473 family. | Putative protein YqeH. | 0.548 |
AIE60840.1 | ywfO | BMMGA3_12235 | BMMGA3_16245 | Hypothetical protein; Belongs to the UPF0473 family. | Putative protein YwfO. | 0.450 |
dnaI | AIE60840.1 | BMMGA3_12985 | BMMGA3_12235 | Primosomal protein DnaI. | Hypothetical protein; Belongs to the UPF0473 family. | 0.572 |
dnaI | rpoE | BMMGA3_12985 | BMMGA3_16145 | Primosomal protein DnaI. | DNA-directed RNA polymerase subunit delta; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family. | 0.640 |
dnaI | spxA | BMMGA3_12985 | BMMGA3_04545 | Primosomal protein DnaI. | Regulatory protein spx; Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development- promoting processes and to increase transcription of genes involved in thiol homeostasis, during periods of extreme stress. Belongs to the ArsC family. Spx subfamily. | 0.413 |
dnaI | yqeH | BMMGA3_12985 | BMMGA3_12135 | Primosomal protein DnaI. | Putative protein YqeH. | 0.607 |
helD | AIE59486.1 | BMMGA3_07645 | BMMGA3_05280 | Helicase IV. | Hypothetical protein; Belongs to the UPF0356 family. | 0.511 |
helD | rpoC | BMMGA3_07645 | BMMGA3_00660 | Helicase IV. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.884 |
helD | rpoE | BMMGA3_07645 | BMMGA3_16145 | Helicase IV. | DNA-directed RNA polymerase subunit delta; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family. | 0.726 |
helD | rpoZ | BMMGA3_07645 | BMMGA3_05855 | Helicase IV. | Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.770 |
rpoC | AIE59486.1 | BMMGA3_00660 | BMMGA3_05280 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Hypothetical protein; Belongs to the UPF0356 family. | 0.691 |
rpoC | helD | BMMGA3_00660 | BMMGA3_07645 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Helicase IV. | 0.884 |
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