STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFP94612.1Hypothetical protein. (196 aa)    
Predicted Functional Partners:
EFP95638.1
COG1404 Subtilisin-like serine proteases.
   
 0.846
EFP96269.1
Putative cell division protein FtsK; COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
    
   0.550
EFP96684.1
COG3227 Zinc metalloprotease (elastase).
   
 0.549
EFP98345.1
Zinc metalloprotease, vibriolysin; Extracellular zinc metalloprotease.
   
 0.549
EFP95808.1
Extracellular zinc metalloprotease; Extracellular zinc metalloprotease.
   
 0.549
EFP95823.1
Amino acid adenylation domain protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.525
EFP96978.1
Hypothetical protein; COG0438 Glycosyltransferase.
    
 0.463
EFP98050.1
Lipolytic protein; COG2755 Lysophospholipase L1 and related esterases.
    
  0.455
EFP96496.1
Arylesterase; COG2755 Lysophospholipase L1 and related esterases.
    
  0.455
EFP97514.1
Serine protease / subtilase peptidase; COG1404 Subtilisin-like serine proteases; Belongs to the peptidase S8 family.
    
  0.438
Your Current Organism:
Vibrio caribbeanicus
NCBI taxonomy Id: 796620
Other names: V. caribbeanicus ATCC BAA-2122, Vibrio caribbeanicus ATCC BAA-2122, Vibrio caribbenthicus ATCC BAA-2122, Vibrio sp. N384, Vibrio sp. SP2010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.