STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFP96832.1OsmC family protein; COG1764 Predicted redox protein, regulator of disulfide bond formation. (137 aa)    
Predicted Functional Partners:
EFP95190.1
Hypothetical protein; COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); Belongs to the Dps family.
  
  
 0.609
EFP96295.1
Putative serine protein kinase, PrkA; COG2766 Putative Ser protein kinase.
   
    0.549
EFP96831.1
Hypothetical protein.
       0.498
bamE
Small protein A; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
  
 0.484
EFP97286.1
COG0753 Catalase; catalase, N-terminal.
 
  
 0.401
Your Current Organism:
Vibrio caribbeanicus
NCBI taxonomy Id: 796620
Other names: V. caribbeanicus ATCC BAA-2122, Vibrio caribbeanicus ATCC BAA-2122, Vibrio caribbenthicus ATCC BAA-2122, Vibrio sp. N384, Vibrio sp. SP2010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.