STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFP94963.1Hypothetical protein. (154 aa)    
Predicted Functional Partners:
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
   
    0.831
EFP97023.1
COG3242 Uncharacterized protein conserved in bacteria.
  
     0.749
EFP95179.1
Hypothetical protein.
  
    0.736
bamC
Lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.723
EFP95502.1
Smp protein, putative; COG3726 Uncharacterized membrane protein affecting hemolysin expression.
  
     0.710
EFP98186.1
COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
     0.708
EFP94964.1
Hypothetical protein.
 
   
 0.704
EFP97732.1
Heme exporter protein D; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.
  
   
 0.694
EFP96763.1
COG3203 Outer membrane protein (porin).
  
     0.666
rrmJ
23S rRNA methyltransferase J; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
   
    0.657
Your Current Organism:
Vibrio caribbeanicus
NCBI taxonomy Id: 796620
Other names: V. caribbeanicus ATCC BAA-2122, Vibrio caribbeanicus ATCC BAA-2122, Vibrio caribbenthicus ATCC BAA-2122, Vibrio sp. N384, Vibrio sp. SP2010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.