STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsdc1BSD domain containing 1. (427 aa)    
Predicted Functional Partners:
Ghitm
Growth hormone inducible transmembrane protein.
   
    0.792
Atg13
Autophagy related 13.
   
    0.587
LOC102002737
Magnesium-dependent phosphatase 1.
      
 0.544
Hsdl2
Hydroxysteroid dehydrogenase like 2.
    
 
 0.500
Sdc1
Syndecan 1.
      
 0.446
Hpse
Heparanase.
      
 0.438
Polr3d
RNA polymerase III subunit D.
      
 0.436
Exoc7
Exocyst complex component 7.
      
 0.433
Tmem97
Transmembrane protein 97.
      
 0.433
Pnpo
Pyridoxamine 5'-phosphate oxidase.
      
 0.428
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.