Ssna1 protein (Microtus ochrogaster) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Ssna1

SS nuclear autoantigen 1. (119 aa)

Predicted Functional Partners:

Polr2j

0.764

Psmc5

0.692

Haus1

0.629

Septin2

0.528

ENSMOCP00000008490

0.524

Haus7

0.524

Rbm42

0.515

Haus5

0.515

Septin5

0.499

Sept7

0.499

Your Current Organism:

Microtus ochrogaster

NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMOCP00000008490	Haus1	ENSMOCP00000008490	ENSMOCP00000011127	annotation not available	HAUS augmin like complex subunit 1.	0.980
ENSMOCP00000008490	Haus5	ENSMOCP00000008490	ENSMOCP00000020061	annotation not available	HAUS augmin like complex subunit 5.	0.923
ENSMOCP00000008490	Rbm42	ENSMOCP00000008490	ENSMOCP00000000506	annotation not available	RNA binding motif protein 42.	0.923
ENSMOCP00000008490	Ssna1	ENSMOCP00000008490	ENSMOCP00000000858	annotation not available	SS nuclear autoantigen 1.	0.524
Haus1	ENSMOCP00000008490	ENSMOCP00000011127	ENSMOCP00000008490	HAUS augmin like complex subunit 1.	annotation not available	0.980
Haus1	Haus5	ENSMOCP00000011127	ENSMOCP00000020061	HAUS augmin like complex subunit 1.	HAUS augmin like complex subunit 5.	0.976
Haus1	Haus7	ENSMOCP00000011127	ENSMOCP00000018579	HAUS augmin like complex subunit 1.	HAUS augmin like complex subunit 7.	0.980
Haus1	Rbm42	ENSMOCP00000011127	ENSMOCP00000000506	HAUS augmin like complex subunit 1.	RNA binding motif protein 42.	0.976
Haus1	Ssna1	ENSMOCP00000011127	ENSMOCP00000000858	HAUS augmin like complex subunit 1.	SS nuclear autoantigen 1.	0.629
Haus5	ENSMOCP00000008490	ENSMOCP00000020061	ENSMOCP00000008490	HAUS augmin like complex subunit 5.	annotation not available	0.923
Haus5	Haus1	ENSMOCP00000020061	ENSMOCP00000011127	HAUS augmin like complex subunit 5.	HAUS augmin like complex subunit 1.	0.976
Haus5	Haus7	ENSMOCP00000020061	ENSMOCP00000018579	HAUS augmin like complex subunit 5.	HAUS augmin like complex subunit 7.	0.923
Haus5	Ssna1	ENSMOCP00000020061	ENSMOCP00000000858	HAUS augmin like complex subunit 5.	SS nuclear autoantigen 1.	0.515
Haus7	Haus1	ENSMOCP00000018579	ENSMOCP00000011127	HAUS augmin like complex subunit 7.	HAUS augmin like complex subunit 1.	0.980
Haus7	Haus5	ENSMOCP00000018579	ENSMOCP00000020061	HAUS augmin like complex subunit 7.	HAUS augmin like complex subunit 5.	0.923
Haus7	Rbm42	ENSMOCP00000018579	ENSMOCP00000000506	HAUS augmin like complex subunit 7.	RNA binding motif protein 42.	0.923
Haus7	Ssna1	ENSMOCP00000018579	ENSMOCP00000000858	HAUS augmin like complex subunit 7.	SS nuclear autoantigen 1.	0.524
Polr2j	Ssna1	ENSMOCP00000001665	ENSMOCP00000000858	RNA polymerase II subunit J.	SS nuclear autoantigen 1.	0.764
Psmc5	Ssna1	ENSMOCP00000006555	ENSMOCP00000000858	Proteasome 26S subunit, ATPase 5.	SS nuclear autoantigen 1.	0.692
Rbm42	ENSMOCP00000008490	ENSMOCP00000000506	ENSMOCP00000008490	RNA binding motif protein 42.	annotation not available	0.923