STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snrnp40Small nuclear ribonucleoprotein U5 subunit 40. (358 aa)    
Predicted Functional Partners:
Prpf6
pre-mRNA processing factor 6.
   
 0.999
Snrnp200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.999
Prpf8
pre-mRNA processing factor 8.
   
 0.999
Ddx23
DEAD-box helicase 23.
    
 0.999
Txnl4a
Thioredoxin like 4A.
    
 0.998
Snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
 0.994
Snrpd1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 0.989
Snrpd3
Small nuclear ribonucleoprotein D3 polypeptide.
   
 0.986
Eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 0.985
ENSMOCP00000019760
annotation not available
   
 0.985
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.