STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmem43Transmembrane protein 43. (400 aa)    
Predicted Functional Partners:
Endod1
Endonuclease domain containing 1.
    
 0.652
Emd
Emerin.
    
 
 0.573
Ncln
Nicalin.
      
 0.567
Pkp2
Plakophilin 2.
      
 0.558
Smpd4
Sphingomyelin phosphodiesterase 4.
      
 0.552
Sun2
Sad1 and UNC84 domain containing 2.
    
 
 0.552
Jup
Junction plakoglobin.
      
 0.551
Dsg2
Desmoglein 2.
      
 0.550
Kbtbd12
Kelch repeat and BTB domain containing 12.
      
 0.540
Stt3b
STT3 oligosaccharyltransferase complex catalytic subunit B.
      
 0.540
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.