STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SetxSenataxin. (2552 aa)    
Predicted Functional Partners:
Polr2a
RNA polymerase II subunit A.
   
 
 0.966
Scaf8
SR-related CTD associated factor 8.
   
 
 0.965
Scaf4
SR-related CTD associated factor 4.
   
 
 0.961
Ramac
RNA guanine-7 methyltransferase activating subunit.
   
 
 0.953
Smg1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase.
   
 
  0.941
Ncbp2
Nuclear cap binding protein subunit 2.
    
 
 0.860
Upf2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.858
Supt5
SPT5 homolog, DSIF elongation factor subunit.
    
 
 0.838
Nipbl
NIPBL cohesin loading factor.
   
    0.820
ENSMOCP00000010479
annotation not available
    
 
 0.810
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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