STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trim21Tripartite motif containing 21. (468 aa)    
Predicted Functional Partners:
Ro60
Ro60, Y RNA binding protein.
    
 0.933
Isg15
ISG15 ubiquitin like modifier.
   
 0.928
Ube2e1
Ubiquitin conjugating enzyme E2 E1.
    
 0.864
LOC101978981
Ubiquitin-like.
    
 0.843
Kxd1
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.837
Ddx41
DEAD-box helicase 41.
    
 0.833
Ddx58
DExD/H-box helicase 58.
   
 0.819
ENSMOCP00000000250
annotation not available
    
  0.818
Irf3
Interferon regulatory factor 3.
   
 0.782
Ifih1
Interferon induced with helicase C domain 1.
   
 0.778
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.