STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Upk3aUroplakin 3A. (287 aa)    
Predicted Functional Partners:
Upk1b
Uroplakin 1B.
   
 
 0.737
Upk1a
Uroplakin 1A.
   
 
 0.679
Upk2
Uroplakin 2.
   
  
 0.655
Snx31
Sorting nexin 31.
    
 
 0.481
Gcsam
Germinal center associated signaling and motility.
      
 0.443
Ggt5
Gamma-glutamyltransferase 5.
      
 0.443
Tmem14a
Transmembrane protein 14A.
      
 0.439
Zfp512b
Zinc finger protein 512B.
      
 0.431
Zfand3
Zinc finger AN1-type containing 3.
      
 0.428
Fgd6
FYVE, RhoGEF and PH domain containing 6.
      
 0.426
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.