STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srrm3Serine/arginine repetitive matrix 3. (648 aa)    
Predicted Functional Partners:
Cdc40
Cell division cycle 40.
   
 0.983
Cwc25
CWC25 spliceosome associated protein homolog.
   
 0.981
Syf2
SYF2 pre-mRNA splicing factor.
    
 0.981
Dhx38
DEAH-box helicase 38.
    
 0.979
Slu7
SLU7 homolog, splicing factor.
    
 0.977
Snrpe
Small nuclear ribonucleoprotein polypeptide E.
    
 0.972
ENSMOCP00000001814
annotation not available
    
 0.969
ENSMOCP00000005742
annotation not available
    
 0.969
Snrpd1
Small nuclear ribonucleoprotein D1 polypeptide.
    
 0.967
Snrpd3
Small nuclear ribonucleoprotein D3 polypeptide.
    
 0.965
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.