STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rab3dRAB3D, member RAS oncogene family. (219 aa)    
Predicted Functional Partners:
Rims2
Regulating synaptic membrane exocytosis 2.
    
 0.997
Rab27b
RAB27B, member RAS oncogene family.
  
  
0.840
Rab11b
RAB11B, member RAS oncogene family.
  
 
0.837
Rab11a
RAB11A, member RAS oncogene family.
  
 
0.836
Syt1
Synaptotagmin 1.
   
 0.835
Syt2
Synaptotagmin 2.
   
 0.835
Snap25
Synaptosome associated protein 25.
   
 0.826
Rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 0.819
Syt4
Synaptotagmin 4.
   
 0.813
Syt11
Synaptotagmin XI.
   
 0.813
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.