STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pde6dPhosphodiesterase 6D. (150 aa)    
Predicted Functional Partners:
Arl2
ADP ribosylation factor like GTPase 2.
    
 0.983
Arl3
ADP ribosylation factor like GTPase 3.
   
 0.974
Arl13a
ADP ribosylation factor like GTPase 13A.
    
 0.973
Rheb
Ras homolog, mTORC1 binding.
    
 0.967
Rpgr
Retinitis pigmentosa GTPase regulator.
    
 
 0.963
Inpp5e
Inositol polyphosphate-5-phosphatase E.
    
 0.941
Rhebl1
RHEB like 1.
    
 0.930
Pde6c
Phosphodiesterase 6C.
    
 0.910
Arl13b
ADP ribosylation factor like GTPase 13B.
     
 0.907
Rcc1
Regulator of chromosome condensation 1.
    
 
 0.900
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.