STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cbln3Cerebellin 3 precursor. (197 aa)    
Predicted Functional Partners:
Gabra6
Gamma-aminobutyric acid type A receptor alpha6 subunit.
   
  
 0.815
Ttc41
Tetratricopeptide repeat protein 41-like.
    
 0.691
Tep1
Telomerase associated protein 1.
    
 0.691
Nynrin
NYN domain and retroviral integrase containing.
    
 
 0.670
C1qc
Complement C1q C chain.
    
  0.656
Loxl1
Lysyl oxidase like 1.
    
 0.653
Setdb1
SET domain bifurcated histone lysine methyltransferase 1.
    
  0.587
Setdb2
Histone-lysine N-methyltransferase SETDB2.
    
  0.587
Lox
Lysyl oxidase.
    
 0.559
Tnfaip6
TNF alpha induced protein 6.
    
 0.556
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.