Fam13b protein (Microtus ochrogaster) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Fam13b

Family with sequence similarity 13 member B. (859 aa)

Predicted Functional Partners:

Cdc42

0.689

Rac2

0.581

Rac1

0.581

Rac3

0.581

ENSMOCP00000003710

0.554

Rhob

0.554

Rhoc

0.554

Rhoa

0.554

Rnd1

0.554

Rnd3

0.554

Your Current Organism:

Microtus ochrogaster

NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cdc42	ENSMOCP00000003710	ENSMOCP00000015794	ENSMOCP00000003710	Cell division cycle 42.	annotation not available	0.917
Cdc42	Fam13b	ENSMOCP00000015794	ENSMOCP00000005545	Cell division cycle 42.	Family with sequence similarity 13 member B.	0.689
Cdc42	Rac1	ENSMOCP00000015794	ENSMOCP00000017937	Cell division cycle 42.	Rac family small GTPase 1.	0.947
Cdc42	Rac2	ENSMOCP00000015794	ENSMOCP00000010963	Cell division cycle 42.	Rac family small GTPase 2.	0.900
Cdc42	Rac3	ENSMOCP00000015794	ENSMOCP00000020473	Cell division cycle 42.	Rac family small GTPase 3.	0.891
Cdc42	Rhoa	ENSMOCP00000015794	ENSMOCP00000016808	Cell division cycle 42.	Ras homolog family member A.	0.917
Cdc42	Rhob	ENSMOCP00000015794	ENSMOCP00000008052	Cell division cycle 42.	Ras homolog family member B.	0.867
Cdc42	Rhoc	ENSMOCP00000015794	ENSMOCP00000013485	Cell division cycle 42.	Ras homolog family member C.	0.895
Cdc42	Rnd1	ENSMOCP00000015794	ENSMOCP00000017115	Cell division cycle 42.	Rho family GTPase 1.	0.723
Cdc42	Rnd3	ENSMOCP00000015794	ENSMOCP00000022006	Cell division cycle 42.	Rho family GTPase 3.	0.718
ENSMOCP00000003710	Cdc42	ENSMOCP00000003710	ENSMOCP00000015794	annotation not available	Cell division cycle 42.	0.917
ENSMOCP00000003710	Fam13b	ENSMOCP00000003710	ENSMOCP00000005545	annotation not available	Family with sequence similarity 13 member B.	0.554
ENSMOCP00000003710	Rac1	ENSMOCP00000003710	ENSMOCP00000017937	annotation not available	Rac family small GTPase 1.	0.893
ENSMOCP00000003710	Rac2	ENSMOCP00000003710	ENSMOCP00000010963	annotation not available	Rac family small GTPase 2.	0.893
ENSMOCP00000003710	Rac3	ENSMOCP00000003710	ENSMOCP00000020473	annotation not available	Rac family small GTPase 3.	0.893
ENSMOCP00000003710	Rhob	ENSMOCP00000003710	ENSMOCP00000008052	annotation not available	Ras homolog family member B.	0.522
ENSMOCP00000003710	Rnd1	ENSMOCP00000003710	ENSMOCP00000017115	annotation not available	Rho family GTPase 1.	0.805
ENSMOCP00000003710	Rnd3	ENSMOCP00000003710	ENSMOCP00000022006	annotation not available	Rho family GTPase 3.	0.647
Fam13b	Cdc42	ENSMOCP00000005545	ENSMOCP00000015794	Family with sequence similarity 13 member B.	Cell division cycle 42.	0.689
Fam13b	ENSMOCP00000003710	ENSMOCP00000005545	ENSMOCP00000003710	Family with sequence similarity 13 member B.	annotation not available	0.554