STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccdc85aCoiled-coil domain containing 85A. (545 aa)    
Predicted Functional Partners:
Arhgap23
Rho GTPase activating protein 23.
    
 
 0.616
Katnal2
Katanin p60 subunit A-like 2.
   
 
  0.461
Card19
Caspase recruitment domain family member 19.
      
 0.457
Arhgap21
Rho GTPase activating protein 21.
    
 
 0.456
ENSMOCP00000003106
annotation not available
    
 
 0.456
Il10rb
Interleukin 10 receptor subunit beta.
   
 
 0.433
Trp53bp2
Tumor protein p53 binding protein 2.
   
 
 0.433
Bud13
BUD13 homolog.
      
 0.426
Ly6h
Lymphocyte antigen 6 family member H.
      
 0.422
Ifnar1
Interferon alpha and beta receptor subunit 1.
   
 
 0.417
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.