STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Usp47Ubiquitin specific peptidase 47. (1376 aa)    
Predicted Functional Partners:
Polb
DNA polymerase beta.
    
 0.882
Fbxw11
F-box and WD repeat domain containing 11.
    
 
 0.846
Trip12
Thyroid hormone receptor interactor 12.
   
  
 0.806
Btrc
Beta-transducin repeat containing E3 ubiquitin protein ligase.
    
 
 0.746
Poll
DNA polymerase lambda.
    
 0.740
Enkd1
Enkurin domain containing 1.
    
 0.673
Polm
DNA polymerase mu.
    
 0.673
Dntt
DNA nucleotidylexotransferase.
    
 0.673
Rab3gap1
RAB3 GTPase activating protein catalytic subunit 1.
   
    0.554
Pcm1
Pericentriolar material 1.
   
    0.522
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.