STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Prpf40apre-mRNA processing factor 40 homolog A. (950 aa)    
Predicted Functional Partners:
Rbm25
RNA binding motif protein 25.
   
 0.982
Ccar1
Cell division cycle and apoptosis regulator 1.
   
  0.932
Rbm39
RNA binding motif protein 39.
   
  0.910
U2surp
U2 snRNP associated SURP domain containing.
   
 
 0.901
Sf1
Splicing factor 1.
   
 0.886
Htt
Huntingtin.
   
 0.885
ENSMOCP00000004083
annotation not available
   
  0.860
ENSMOCP00000019571
annotation not available
   
  0.860
Sf3a1
Splicing factor 3a subunit 1.
   
 
 0.856
Thoc2
THO complex 2.
   
 
 0.855
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.