STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BcamBasal cell adhesion molecule (Lutheran blood group). (623 aa)    
Predicted Functional Partners:
Lama4
Laminin subunit alpha 4.
   
 0.784
Ptk7
Protein tyrosine kinase 7 (inactive).
    
0.717
Cd47
CD47 molecule.
    
 0.684
F11r
F11 receptor.
    
 0.645
Rhof
Ras homolog family member F, filopodia associated.
    
 0.627
Il9
Interleukin 9.
  
 
 0.616
Jup
Junction plakoglobin.
   
 0.615
Col22a1
Collagen, type XXII, alpha 1.
    
 0.609
LOC102001807
Low affinity immunoglobulin gamma Fc region receptor II-like.
    
  0.600
Nhs
NHS actin remodeling regulator.
    
  0.593
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.