STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dhx16DEAH-box helicase 16. (1045 aa)    
Predicted Functional Partners:
Gpkow
G-patch domain and KOW motifs.
    
 0.995
Cdc40
Cell division cycle 40.
   
 0.994
ENSMOCP00000005844
annotation not available
    
 0.993
Cwc27
CWC27 spliceosome associated cyclophilin.
  
 0.991
Sf3b2
Splicing factor 3b subunit 2.
   
 0.990
Snrnp200
Small nuclear ribonucleoprotein U5 subunit 200.
  
 
 0.988
Xab2
XPA binding protein 2.
   
 0.988
Cdc5l
Cell division cycle 5 like.
   
 0.988
Sf3a1
Splicing factor 3a subunit 1.
   
 0.986
Prpf8
pre-mRNA processing factor 8.
   
 
 0.986
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.