STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ddx54DEAD-box helicase 54. (872 aa)    
Predicted Functional Partners:
Pes1
Pescadillo ribosomal biogenesis factor 1.
   
 0.993
Nifk
Nucleolar protein interacting with the FHA domain of MKI67.
   
 
 0.988
Noc2l
NOC2 like nucleolar associated transcriptional repressor.
   
 
 0.986
Bop1
BOP1 ribosomal biogenesis factor.
   
 0.985
Rpf2
Ribosome production factor 2 homolog.
   
 
 0.984
Gnl3
G protein nucleolar 3.
  
 0.984
Gnl3l
G protein nucleolar 3 like.
  
 0.984
Nsun6
NOP2/Sun RNA methyltransferase 6.
  
 
 0.979
Nop2
NOP2 nucleolar protein.
  
 
 0.979
Ftsj3
FtsJ RNA 2'-O-methyltransferase 3.
  
 0.976
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.