STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Otud5OTU deubiquitinase 5. (567 aa)    
Predicted Functional Partners:
Kxd1
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.954
LOC101978981
Ubiquitin-like.
    
 0.953
Traf3
TNF receptor associated factor 3.
    
 0.952
ENSMOCP00000000250
annotation not available
    
  0.923
Traf5
TNF receptor associated factor 5.
    
 0.903
LOC101983222
Ubiquitin.
    
  0.900
Rps27a
Ribosomal protein S27a.
    
 0.866
ENSMOCP00000008122
annotation not available
    
 0.866
ENSMOCP00000009459
annotation not available
    
 0.866
LOC101994433
ubiquitin-40S ribosomal protein S27a.
    
 0.866
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.