STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcdhga11Protocadherin gamma subfamily A, 11. (856 aa)    
Predicted Functional Partners:
Fjx1
Four-jointed box kinase 1.
   
 0.596
Myo9a
Myosin IXA.
    
 0.585
Myo9b
Myosin IXB.
    
 0.585
Jup
Junction plakoglobin.
    
 0.530
Uck2
Uridine-cytidine kinase 2.
    
 0.528
Ctnnb1
Catenin beta 1.
    
 0.528
Uckl1
Uridine-cytidine kinase 1 like 1.
    
 0.528
Uck1
Uridine-cytidine kinase 1.
    
 0.528
Fat2
FAT atypical cadherin 2.
    
 
0.514
Fat1
FAT atypical cadherin 1.
    
 
0.514
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.