STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Urb1URB1 ribosome biogenesis homolog. (2254 aa)    
Predicted Functional Partners:
Pdcd11
Programmed cell death 11.
   
 
 0.980
Ddx24
DEAD-box helicase 24.
   
 
 0.951
Heatr1
HEAT repeat containing 1.
   
 
 0.944
Utp20
UTP20 small subunit processome component.
   
  
 0.930
Nat10
N-acetyltransferase 10.
   
 
 0.927
Polr1a
RNA polymerase I subunit A.
   
    0.923
Pwp2
PWP2 small subunit processome component.
   
  
 0.911
Polr1b
RNA polymerase I subunit B.
   
  
 0.908
Cebpz
CCAAT enhancer binding protein zeta.
   
 
 0.905
Bop1
BOP1 ribosomal biogenesis factor.
   
 
 0.899
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.