STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smco2Single-pass membrane protein with coiled-coil domains 2. (340 aa)    
Predicted Functional Partners:
Arntl2
Aryl hydrocarbon receptor nuclear translocator like 2.
      
 0.575
Asah2
N-acylsphingosine amidohydrolase 2.
      
 0.441
ENSMOCP00000010751
annotation not available
      
 0.438
ENSMOCP00000025731
annotation not available
      
 0.438
Arntl
Aryl hydrocarbon receptor nuclear translocator like.
      
 0.426
Osbpl8
Oxysterol binding protein like 8.
      
 0.418
Gbe1
1,4-alpha-glucan branching enzyme 1.
      
 0.416
Clnk
Cytokine dependent hematopoietic cell linker.
  
     0.402
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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