STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Prpf38apre-mRNA processing factor 38A. (312 aa)    
Predicted Functional Partners:
Mfap1
Microfibril associated protein 1.
   
 0.997
Zmat2
Zinc finger matrin-type 2.
   
 0.992
Tcerg1
Transcription elongation regulator 1.
   
 0.980
Tcerg1l
Transcription elongation regulator 1 like.
   
 0.978
Ik
IK cytokine.
   
 0.975
Smu1
SMU1 DNA replication regulator and spliceosomal factor.
   
 0.965
Prpf6
pre-mRNA processing factor 6.
   
 0.961
Prpf3
pre-mRNA processing factor 3.
   
 0.957
Wbp4
WW domain binding protein 4.
   
 0.957
Prpf8
pre-mRNA processing factor 8.
    
 
 0.957
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.