STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lmcd1LIM and cysteine rich domains 1. (365 aa)    
Predicted Functional Partners:
Gata6
GATA binding protein 6.
    
 0.888
Gata5
GATA binding protein 5.
    
 0.733
Gata4
GATA binding protein 4.
    
 0.733
Vangl1
VANGL planar cell polarity protein 1.
    
 0.729
Vangl2
VANGL planar cell polarity protein 2.
    
 0.729
Gata1
GATA binding protein 1.
    
 0.711
ENSMOCP00000008523
annotation not available
    
 0.710
Dvl3
Dishevelled segment polarity protein 3.
    
 0.710
Dvl1
Dishevelled segment polarity protein 1.
    
 0.710
Dvl2
Dishevelled segment polarity protein 2.
    
 0.710
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.