STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zranb1Zinc finger RANBP2-type containing 1. (708 aa)    
Predicted Functional Partners:
Kxd1
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.951
Traf6
TNF receptor associated factor 6.
    
 0.950
LOC101978981
Ubiquitin-like.
   
 0.949
ENSMOCP00000000250
annotation not available
    
  0.918
Ubxn7
UBX domain protein 7.
   
   0.916
LOC101983222
Ubiquitin.
    
  0.894
Apc
APC regulator of WNT signaling pathway.
    
  0.847
Tnf
Tumor necrosis factor.
   
 0.834
Ripk4
Receptor interacting serine/threonine kinase 4.
   
 0.823
Rps27a
Ribosomal protein S27a.
    
  0.793
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.