STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Barhl1BarH like homeobox 1. (327 aa)    
Predicted Functional Partners:
Lhx1
LIM homeobox 1.
    
 
 0.526
Lhx5
LIM homeobox 5.
    
 
 0.526
Lhx9
LIM homeobox 9.
   
 
 0.503
Isl1
ISL LIM homeobox 1.
   
 
 0.488
Isl2
ISL LIM homeobox 2.
   
 
 0.488
Fancm
FA complementation group M.
     
 0.485
Ptf1a
Pancreas associated transcription factor 1a.
   
  
 0.464
Atoh1
Atonal bHLH transcription factor 1.
   
  
 0.460
Irx3
Iroquois homeobox 3.
   
 
 0.451
Ercc4
ERCC excision repair 4, endonuclease catalytic subunit.
     
 0.441
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.