STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Txnl4bThioredoxin like 4B. (149 aa)    
Predicted Functional Partners:
Snrpd3
Small nuclear ribonucleoprotein D3 polypeptide.
   
  0.987
Prpf6
pre-mRNA processing factor 6.
    
 0.983
Snrnp200
Small nuclear ribonucleoprotein U5 subunit 200.
    
 0.983
Zmat2
Zinc finger matrin-type 2.
    
 0.980
Prpf8
pre-mRNA processing factor 8.
    
 0.980
Pqbp1
Polyglutamine binding protein 1.
   
 0.975
Sart1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
    
 0.974
Prpf31
pre-mRNA processing factor 31.
    
 0.973
Snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
  0.973
Lsm5
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.971
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.