STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smchd1Structural maintenance of chromosomes flexible hinge domain containing 1. (2006 aa)    
Predicted Functional Partners:
Pds5a
PDS5 cohesin associated factor A.
   
  
 0.803
Phip
Pleckstrin homology domain interacting protein.
   
    0.756
Scaf11
SR-related CTD associated factor 11.
   
    0.752
Ahctf1
AT-hook containing transcription factor 1.
   
  
 0.723
Lrif1
Ligand dependent nuclear receptor interacting factor 1.
    
 
 0.682
Dmxl1
Dmx like 1.
   
    0.673
ENSMOCP00000001039
annotation not available
   
    0.589
Mettl4
Methyltransferase like 4.
   
  
 0.568
Macroh2a2
Core histone macro-H2A.2.
      
 0.559
Birc6
Baculoviral IAP repeat containing 6.
   
   0.535
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.