STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sec16aSEC16 homolog A, endoplasmic reticulum export factor. (2355 aa)    
Predicted Functional Partners:
Sec24c
SEC24 homolog C, COPII coat complex component.
   
 0.998
Sec24b
SEC24 homolog B, COPII coat complex component.
   
 0.992
Sec24d
SEC24 homolog D, COPII coat complex component.
   
 0.991
Sec24a
SEC24 homolog A, COPII coat complex component.
   
 0.988
Sec13
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 0.988
Sec23b
SEC23 homolog B, coat complex II component.
   
 0.973
Sec23a
Sec23 homolog A, coat complex II component.
   
 0.973
ENSMOCP00000005026
annotation not available
   
 0.886
Sec31b
SEC31 homolog B, COPII coat complex component.
   
 0.886
ENSMOCP00000022565
annotation not available
   
 0.886
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.