STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hfm1HFM1, ATP-dependent DNA helicase homolog. (1430 aa)    
Predicted Functional Partners:
Prpf8
pre-mRNA processing factor 8.
   
 0.992
Prpf6
pre-mRNA processing factor 6.
   
 0.983
Ascc2
Activating signal cointegrator 1 complex subunit 2.
    
 0.977
Snrpd3
Small nuclear ribonucleoprotein D3 polypeptide.
   
 0.973
Snrpe
Small nuclear ribonucleoprotein polypeptide E.
  
 0.968
Sart1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 0.958
Prpf31
pre-mRNA processing factor 31.
    
 0.957
Snrnp40
Small nuclear ribonucleoprotein U5 subunit 40.
   
 0.955
Sf3b3
Splicing factor 3b subunit 3.
   
 
 0.954
Prpf3
pre-mRNA processing factor 3.
    
 0.952
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.