STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vps45Vacuolar protein sorting 45 homolog. (570 aa)    
Predicted Functional Partners:
Stx16
Syntaxin 16.
    
 
 0.990
Stx6
Syntaxin 6.
    
 
 0.970
Vti1a
Vesicle transport through interaction with t-SNAREs 1A.
   
 
 0.970
Stx8
Syntaxin 8.
    
 
 0.930
ENSMOCP00000004086
annotation not available
   
 
 0.929
Vti1b
Vesicle transport through interaction with t-SNAREs 1B.
   
 
 0.929
Cog6
Component of oligomeric golgi complex 6.
    
 0.925
Capzb
Capping actin protein of muscle Z-line subunit beta.
    
   0.915
Vps18
VPS18 core subunit of CORVET and HOPS complexes.
    
 0.913
Cog8
Component of oligomeric golgi complex 8.
    
 0.901
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.