STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gm28729Uncharacterized LOC113458247. (409 aa)    
Predicted Functional Partners:
Ubxn7
UBX domain protein 7.
    
 0.993
Cul5
Cullin 5.
    
 0.985
Cul2
Cullin 2.
    
 0.977
Ddb1
Damage specific DNA binding protein 1.
    
 0.960
Skp2
S-phase kinase associated protein 2.
    
 0.942
Gps1
G protein pathway suppressor 1.
   
 0.933
Vhl
Von Hippel-Lindau tumor suppressor.
    
 0.932
Cul1
Cullin 1.
    
 0.928
Cul3
Cullin 3.
    
 0.927
Ube2f
Ubiquitin conjugating enzyme E2 F (putative).
    
 0.922
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.