STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Col5a1Collagen type V alpha 1 chain. (1840 aa)    
Predicted Functional Partners:
Col5a2
Collagen type V alpha 2 chain.
  
0.978
Col1a1
Collagen type I alpha 1 chain.
  
0.947
Col3a1
Collagen type III alpha 1 chain.
  
 
0.915
Col1a2
Collagen type I alpha 2 chain.
  
0.905
Col6a2
Collagen type VI alpha 2 chain.
   
0.880
Fbn1
Fibrillin 1.
   
 0.836
Col6a1
Collagen type VI alpha 1 chain.
   
0.813
ENSMOCP00000019141
annotation not available
   
 0.770
Col16a1
Collagen type XVI alpha 1 chain.
   
0.747
Col4a1
Collagen type IV alpha 1 chain.
  
0.738
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.