STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DesDesmin. (469 aa)    
Predicted Functional Partners:
Vim
Vimentin.
  
 
 
0.901
H2-Ea-ps
H-2 class II histocompatibility antigen, E-U alpha chain.
    
   0.889
Igll1
Immunoglobulin lambda like polypeptide 5.
    
  0.859
Gfap
Glial fibrillary acidic protein.
  
 
0.850
H2-Oa
HLA class II histocompatibility antigen, DO alpha chain.
    
   0.815
ENSMOCP00000002633
annotation not available
   
 0.780
ENSMOCP00000020238
annotation not available
   
 0.774
Emd
Emerin.
    
 0.761
H2-Ab1
H-2 class II histocompatibility antigen, A beta chain-like.
    
  0.746
H2-Ob
HLA class II histocompatibility antigen, DO beta chain.
    
  0.746
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.