STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gpn2GPN-loop GTPase 2. (289 aa)    
Predicted Functional Partners:
Gpn1
GPN-loop GTPase 1.
    
 
0.977
Itsn2
Intersectin 2.
    
 0.963
Polr2b
RNA polymerase II subunit B.
   
 
 0.948
Rpap1
RNA polymerase II associated protein 1.
    
 
 0.944
Itsn1
Intersectin 1.
    
 0.944
Polr2c
RNA polymerase II subunit C.
  
 
 0.936
Polr2j
RNA polymerase II subunit J.
    
 
 0.924
Polr2l
RNA polymerase II subunit L.
   
 
 0.860
Upk3bl
Uroplakin 3B like 2.
    
 
 0.809
Shank3
SH3 and multiple ankyrin repeat domains 3.
   
 0.794
Your Current Organism:
Microtus ochrogaster
NCBI taxonomy Id: 79684
Other names: M. ochrogaster, prairie vole, prairie voles
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.